My congradulations to you for developing a game which almost perfects the original. BoTF is one of my favorite Trek games and I just downloaded Supremacy, so far the game is great, although still getting used to what the ships can do. Can anyone tell me if the intel section has been implimented yet, so far it seems like I have endless officers and intellegence or am I not set up correctly.

Nope, not yet. And it's going to be completely revamped in the next iteration. Officers as they're in the game now will be scrapped, and replaced with some sort of "Leaders" - Officers for fleets, Diplomats for diplomacy and Agents for espionage/sabotage/security. They'll gain experience and increase in level, improving their skills - and consequently their chances of success at their assignments.
There'll be Missions too in the game, to be carried out by Agents.

Notice the game is still in alpha, so a lot is still missing - AI, diplomacy, combat, etc.

Welcome arl215
(What .Iceman said as I was typing and)
The next release of the game should be out in two or three months. It will have most major functions including online multiplayer. What it still will not have is an AI to run your opponents in single player. It will also lack a 3D combat engine. You can use the pre alpha version you have to get use to the way the game is set up. Then some of it will change. That is what we do best. User Matress will be by soon to tell you what I missed and so much more.

Welcoma among us arl215